}\r
if (sequences != null)\r
{\r
- AlignFrame af = new AlignFrame(new Alignment(sequences), alignFrame.applet,\r
+ AlignFrame af = new AlignFrame(new Alignment(sequences), alignFrame.viewport.applet,\r
"Cut & Paste input - " + format,\r
false);\r
af.statusBar.setText("Successfully pasted alignment file");\r