\r
import jalview.datamodel.*;\r
import jalview.io.*;\r
-import jalview.jbappletgui.*;\r
\r
-public class CutAndPasteTransfer\r
- extends GCutAndPasteTransfer\r
+public class CutAndPasteTransfer extends Panel\r
{\r
jalview.bin.JalviewLite applet;\r
+\r
+ boolean pdbImport = false;\r
+ Sequence seq;\r
+ SeqCanvas seqcanvas;\r
+\r
public CutAndPasteTransfer(boolean forImport, jalview.bin.JalviewLite mainApplet)\r
{\r
- super();\r
+ try {\r
+ jbInit();\r
+ } catch (Exception e) {\r
+ e.printStackTrace();\r
+ }\r
+\r
applet = mainApplet;\r
\r
if (!forImport)\r
}\r
}\r
\r
+ public void setPDBImport(Sequence seq, SeqCanvas seqcanvas)\r
+ {\r
+ this.seq = seq;\r
+ this.seqcanvas = seqcanvas;\r
+ pdbImport = true;\r
+ }\r
+\r
+\r
public String getText()\r
{\r
return textarea.getText();\r
+warning);\r
\r
textarea.setCaretPosition(text.length());\r
- return;\r
}\r
\r
- SequenceI[] sequences = null;\r
+ if(pdbImport)\r
+ {\r
+ new MCview.AppletPDBViewer(text, "Paste", seq, seqcanvas);\r
+ }\r
+ else\r
+ {\r
+ SequenceI[] sequences = null;\r
\r
- String format = IdentifyFile.Identify(text, "Paste");\r
- sequences = new FormatAdapter().readFile(text, "Paste", format);\r
+ String format = IdentifyFile.Identify(text, "Paste");\r
+ sequences = new AppletFormatAdapter().readFile(text, "Paste", format);\r
\r
- if (sequences != null)\r
- {\r
- AlignFrame af = new AlignFrame(new Alignment(sequences), applet,\r
- "Cut & Paste input - " + format);\r
- af.statusBar.setText("Successfully pasted alignment file");\r
+ if (sequences != null)\r
+ {\r
+ AlignFrame af = new AlignFrame(new Alignment(sequences), applet,\r
+ "Cut & Paste input - " + format);\r
+ af.statusBar.setText("Successfully pasted alignment file");\r
+ }\r
}\r
\r
- Frame frame = (Frame)this.getParent();\r
- frame.setVisible(false);\r
+ ((Frame)this.getParent()).setVisible(false);\r
}\r
\r
protected void cancel_actionPerformed(ActionEvent e)\r
{\r
- Frame frame = (Frame)this.getParent();\r
- frame.setVisible(false);\r
+ ((Frame)this.getParent()).setVisible(false);\r
+ }\r
+\r
+ protected TextArea textarea = new TextArea();\r
+ Button ok = new Button();\r
+ Button cancel = new Button();\r
+ protected Panel buttonPanel = new Panel();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+\r
+\r
+ private void jbInit() throws Exception {\r
+ textarea.setFont(new java.awt.Font("Monospaced", Font.PLAIN, 10));\r
+ textarea.setText("Paste your alignment file here");\r
+ textarea.addMouseListener(new java.awt.event.MouseAdapter() {\r
+ public void mousePressed(MouseEvent e) {\r
+ textarea_mousePressed(e);\r
+ }\r
+ });\r
+ this.setLayout(borderLayout1);\r
+ ok.setLabel("OK");\r
+ ok.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ ok_actionPerformed(e);\r
+ }\r
+ });\r
+ cancel.setLabel("Cancel");\r
+ cancel.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ cancel_actionPerformed(e);\r
+ }\r
+ });\r
+ this.add(buttonPanel, BorderLayout.SOUTH);\r
+ buttonPanel.add(ok, null);\r
+ buttonPanel.add(cancel, null);\r
+ this.add(textarea, java.awt.BorderLayout.CENTER);\r
}\r
\r
+ void textarea_mousePressed(MouseEvent e) {\r
+ if (textarea.getText().startsWith("Paste your")) {\r
+ textarea.setText("");\r
+ }\r
+ }\r
}\r