JAL-2422 pull up refactoring in preparation for ChimeraX subclasses

[jalview.git] / src / jalview / appletgui / ExtJmol.java

diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index 3966536..179cd55 100644 (file)
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -21,7 +21,6 @@
 package jalview.appletgui;
 
 import jalview.api.AlignmentViewPanel;
-import jalview.api.FeatureRenderer;
 import jalview.api.SequenceRenderer;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
@@ -67,9 +66,6 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void updateColours(Object source)
   {
-
-    // TODO Auto-generated method stub
-
   }
 
   @Override
@@ -79,20 +75,6 @@ public class ExtJmol extends JalviewJmolBinding
   }
 
   @Override
-  public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
-  {
-    AlignmentPanel alignPanel = (AlignmentPanel) alignment;
-    if (alignPanel.av.isShowSequenceFeatures())
-    {
-      return alignPanel.getFeatureRenderer();
-    }
-    else
-    {
-      return null;
-    }
-  }
-
-  @Override
   public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
   {
     return ((AlignmentPanel) alignment).getSequenceRenderer();
@@ -137,8 +119,8 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void refreshPdbEntries()
   {
-    List<PDBEntry> pdbe = new ArrayList<PDBEntry>();
-    List<String> fileids = new ArrayList<String>();
+    List<PDBEntry> pdbe = new ArrayList<>();
+    List<String> fileids = new ArrayList<>();
     SequenceI[] sq = ap.av.getAlignment().getSequencesArray();
     for (int s = 0; s < sq.length; s++)
     {
@@ -181,7 +163,6 @@ public class ExtJmol extends JalviewJmolBinding
   protected JmolAppConsoleInterface createJmolConsole(
           Container consolePanel, String buttonsToShow)
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
@@ -196,14 +177,11 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void releaseReferences(Object svl)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public Map<String, Object> getJSpecViewProperty(String arg0)
   {
-    // TODO Auto-generated method stub
     return null;
   }