JAL-4020 Added search for PyMOLWinWithConsole.bat (and PyMOLWin.exe) in likely places...

[jalview.git] / src / jalview / appletgui / ExtJmol.java

diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index 89228d5..47f9df0 100644 (file)
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -21,12 +21,10 @@
 package jalview.appletgui;
 
 import jalview.api.AlignmentViewPanel;
-import jalview.api.FeatureRenderer;
 import jalview.api.SequenceRenderer;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JalviewJmolBinding;
-import jalview.gui.IProgressIndicator;
 import jalview.io.DataSourceType;
 
 import java.awt.Container;
@@ -36,7 +34,7 @@ import java.util.Map;
 import java.util.Vector;
 
 import org.jmol.api.JmolAppConsoleInterface;
-import org.jmol.java.BS;
+import javajs.util.BS;
 import org.jmol.viewer.Viewer;
 
 /**
@@ -66,18 +64,8 @@ public class ExtJmol extends JalviewJmolBinding
   }
 
   @Override
-  protected IProgressIndicator getIProgressIndicator()
-  {
-    // no progress indicators on applet (could access javascript for this)
-    return null;
-  }
-
-  @Override
   public void updateColours(Object source)
   {
-
-    // TODO Auto-generated method stub
-
   }
 
   @Override
@@ -87,21 +75,6 @@ public class ExtJmol extends JalviewJmolBinding
   }
 
   @Override
-  public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
-  {
-    AlignmentPanel alignPanel = (AlignmentPanel) alignment;
-    if (alignPanel.av.isShowSequenceFeatures())
-    {
-      return alignPanel.getFeatureRenderer();
-    }
-    else
-    {
-      return null;
-    }
-  }
-
-
-  @Override
   public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
   {
     return ((AlignmentPanel) alignment).getSequenceRenderer();
@@ -190,7 +163,6 @@ public class ExtJmol extends JalviewJmolBinding
   protected JmolAppConsoleInterface createJmolConsole(
           Container consolePanel, String buttonsToShow)
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
@@ -203,17 +175,8 @@ public class ExtJmol extends JalviewJmolBinding
   }
 
   @Override
-  public void releaseReferences(Object svl)
-  {
-    // TODO Auto-generated method stub
-
-  }
-
-  @Override
   public Map<String, Object> getJSpecViewProperty(String arg0)
   {
-    // TODO Auto-generated method stub
     return null;
   }
-
 }