JAL-3274 resource path correction, code tidying (constants etc)

[jalview.git] / src / jalview / appletgui / ExtJmol.java

diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index 3966536..5a6d0d0 100644 (file)
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -35,7 +35,7 @@ import java.util.Map;
 import java.util.Vector;
 
 import org.jmol.api.JmolAppConsoleInterface;
-import org.jmol.java.BS;
+import javajs.util.BS;
 import org.jmol.viewer.Viewer;
 
 /**
@@ -67,9 +67,6 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void updateColours(Object source)
   {
-
-    // TODO Auto-generated method stub
-
   }
 
   @Override
@@ -92,6 +89,7 @@ public class ExtJmol extends JalviewJmolBinding
     }
   }
 
+
   @Override
   public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
   {
@@ -137,8 +135,8 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void refreshPdbEntries()
   {
-    List<PDBEntry> pdbe = new ArrayList<PDBEntry>();
-    List<String> fileids = new ArrayList<String>();
+    List<PDBEntry> pdbe = new ArrayList<>();
+    List<String> fileids = new ArrayList<>();
     SequenceI[] sq = ap.av.getAlignment().getSequencesArray();
     for (int s = 0; s < sq.length; s++)
     {
@@ -181,7 +179,6 @@ public class ExtJmol extends JalviewJmolBinding
   protected JmolAppConsoleInterface createJmolConsole(
           Container consolePanel, String buttonsToShow)
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
@@ -196,14 +193,11 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void releaseReferences(Object svl)
   {
-    // TODO Auto-generated method stub
-
   }
 
   @Override
   public Map<String, Object> getJSpecViewProperty(String arg0)
   {
-    // TODO Auto-generated method stub
     return null;
   }