/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
{
this.type = type;
fr = frenderer;
- float mm[] = ((float[][]) fr.minmax.get(type))[0];
+ float mm[] = ((float[][]) fr.getMinMax().get(type))[0];
min = mm[0];
max = mm[1];
- oldcs = fr.featureColours.get(type);
+ oldcs = fr.getFeatureColours().get(type);
if (oldcs instanceof GraduatedColor)
{
cs = new GraduatedColor((GraduatedColor) oldcs, min, max);
{
// cancel
reset();
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
frame.setVisible(false);
}
}
threshline.value = (float) slider.getValue() / 1000f;
cs.setThresh(threshline.value);
changeColour();
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(false);
}
}
}
- fr.featureColours.put(type, acg);
+ fr.setColour(type, acg);
cs = acg;
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(false);
}
void reset()
{
- fr.featureColours.put(type, oldcs);
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ fr.setColour(type, oldcs);
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(true);
}
}
else
{
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
}
// ap.paintAlignment(true);
}