vamsasDemo new branch

[jalview.git] / src / jalview / appletgui / FeatureRenderer.java

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 291ce5f..9d6503d 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -48,12 +48,12 @@ public class FeatureRenderer
     while (e.hasMoreElements())\r
     {\r
       SequenceFeature sf = (SequenceFeature) e.nextElement();\r
-      if (sf.getStart() > seq.getEnd())\r
+      if (sf.getBegin() > seq.getEnd())\r
       {\r
         continue;\r
       }\r
 \r
-      int fstart = seq.findIndex(sf.getStart()) - 1;\r
+      int fstart = seq.findIndex(sf.getBegin()) - 1;\r
       int fend = seq.findIndex(sf.getEnd()) - 1;\r
 \r
       if ( (fstart <= end && fend >= start))\r