remove system.out

[jalview.git] / src / jalview / appletgui / FeatureRenderer.java

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 1061efd..c90fb47 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -295,7 +295,7 @@ public class FeatureRenderer
       }\r
     });\r
 \r
-    dialog.show();\r
+    dialog.setVisible(true);\r
 \r
     jalview.io.FeaturesFile ffile = new jalview.io.FeaturesFile();\r
 \r
@@ -378,6 +378,8 @@ public class FeatureRenderer
         System.arraycopy(renderOrder,0,tro,1,renderOrder.length-1);\r
         renderOrder = tro;\r
 \r
+        ap.paintAlignment(true);\r
+\r
         return true;\r
       }\r
       else\r
@@ -388,6 +390,8 @@ public class FeatureRenderer
 \r
     findAllFeatures();\r
 \r
+    ap.paintAlignment(true);\r
+\r
     return true;\r
   }\r
 \r