Feature Groups added

[jalview.git] / src / jalview / appletgui / FeatureRenderer.java

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 091a127..fae19e8 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -41,6 +41,10 @@ public class FeatureRenderer
     // to be added, in the correct order or rendering\r
     Vector featuresDisplayed;\r
 \r
+    // A higher level for grouping features of a\r
+    // paritcular type\r
+    Hashtable featureGroups = null;\r
+\r
     Color currentColour = null;\r
 \r
     boolean drawText = true;\r
@@ -113,6 +117,14 @@ public class FeatureRenderer
             if(sf==null)\r
               continue;\r
 \r
+            if(featureGroups!=null\r
+               && sf.getFeatureGroup()!=null\r
+               && featureGroups.containsKey(sf.getFeatureGroup())\r
+               && !((Boolean)featureGroups.get(sf.getFeatureGroup())).booleanValue())\r
+            {\r
+              continue;\r
+            }\r
+\r
 \r
             if (sf.getBegin() > seq.getEnd())\r
             {\r
@@ -211,6 +223,15 @@ public class FeatureRenderer
       featureColours.put(featureType, col);\r
     }\r
 \r
+    public void addNewFeature(String name, Color col)\r
+    {\r
+      setColour(name, col);\r
+      if (featuresDisplayed == null)\r
+        featuresDisplayed = new Vector();\r
+      featuresDisplayed.insertElementAt(name, 0);\r
+    }\r
+\r
+\r
  /*   public void setTransparency(float value)\r
     {\r
       transparency = value;\r