JAL-3130 Lots of deprecation fixes. See utils/deprecation_auto_fixes.sh for commands...

[jalview.git] / src / jalview / appletgui / FeatureSettings.java

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index cd85ab7..489cbb1 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -25,6 +25,7 @@ import jalview.api.FeatureSettingsControllerI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 import jalview.util.MessageManager;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
 
 import java.awt.BorderLayout;
 import java.awt.Button;
@@ -591,22 +592,19 @@ public class FeatureSettings extends Panel
   {
     Component[] comps = featurePanel.getComponents();
     int cSize = comps.length;
-
-    Object[][] tmp = new Object[cSize][3];
-    int tmpSize = 0;
-    for (int i = 0; i < cSize; i++)
-    {
-      MyCheckbox check = (MyCheckbox) comps[i];
-      tmp[tmpSize][0] = check.type;
-      tmp[tmpSize][1] = fr.getFeatureStyle(check.type);
-      tmp[tmpSize][2] = new Boolean(check.getState());
-      tmpSize++;
+    FeatureSettingsBean[] rowData = new FeatureSettingsBean[cSize];
+    int i = 0;
+    for (Component comp : comps)
+    {
+      MyCheckbox check = (MyCheckbox) comp;
+      // feature filter set to null as not (yet) offered in applet
+      FeatureColourI colour = fr.getFeatureStyle(check.type);
+      rowData[i] = new FeatureSettingsBean(check.type, colour, null,
+              check.getState());
+      i++;
     }
 
-    Object[][] data = new Object[tmpSize][3];
-    System.arraycopy(tmp, 0, data, 0, tmpSize);
-
-    fr.setFeaturePriority(data);
+    fr.setFeaturePriority(rowData);
 
     ap.paintAlignment(updateOverview, updateOverview);
   }
@@ -705,7 +703,7 @@ public class FeatureSettings extends Panel
   public void mouseClicked(MouseEvent evt)
   {
     MyCheckbox check = (MyCheckbox) evt.getSource();
-    if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) != 0)
+    if ((evt.getModifiersEx() & InputEvent.BUTTON3_DOWN_MASK) != 0)
     {
       this.popupSort(check, fr.getMinMax(), evt.getX(), evt.getY());
     }