import java.awt.event.MouseMotionListener;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
+import java.util.Arrays;
import java.util.Enumeration;
-import java.util.Hashtable;
import java.util.List;
+import java.util.Map;
import java.util.Vector;
public class FeatureSettings extends Panel implements ItemListener,
transparency = new Scrollbar(Scrollbar.HORIZONTAL,
100 - (int) (fr.getTransparency() * 100), 1, 1, 100);
- if (fr.isTransparencyAvailable())
- {
- transparency.addAdjustmentListener(this);
- }
- else
- {
- transparency.setEnabled(false);
- }
+ transparency.addAdjustmentListener(this);
java.net.URL url = getClass().getResource("/images/link.gif");
if (url != null)
Panel tPanel = new Panel(new BorderLayout());
- if (fr.isTransparencyAvailable())
- {
- tPanel.add(transparency, BorderLayout.CENTER);
- tPanel.add(new Label("Transparency"), BorderLayout.EAST);
- }
- else
- {
- tPanel.add(
- new Label("Transparency not available in this web browser"),
- BorderLayout.CENTER);
- }
+ tPanel.add(transparency, BorderLayout.CENTER);
+ tPanel.add(new Label("Transparency"), BorderLayout.EAST);
lowerPanel.add(tPanel, BorderLayout.SOUTH);
final FeatureSettings me = this;
frame.addWindowListener(new WindowAdapter()
{
+ @Override
public void windowClosing(WindowEvent e)
{
if (me.av.featureSettings == me)
width, height);
}
+ @Override
public void paint(Graphics g)
{
g.setColor(Color.black);
60);
}
- protected void popupSort(final MyCheckbox check, final Hashtable minmax,
+ protected void popupSort(final MyCheckbox check,
+ final Map<String, float[][]> minmax,
int x, int y)
{
final String type = check.type;
scr.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- me.ap.alignFrame.avc
- .sortAlignmentByFeatureScore(new String[] { type });
+ me.ap.alignFrame.avc.sortAlignmentByFeatureScore(Arrays
+ .asList(new String[] { type }));
}
});
dens.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- me.ap.alignFrame.avc
- .sortAlignmentByFeatureDensity(new String[] { type });
+ me.ap.alignFrame.avc.sortAlignmentByFeatureDensity(Arrays
+ .asList(new String[] { type }));
}
});
men.add(dens);
+
if (minmax != null)
{
- final Object typeMinMax = minmax.get(type);
+ final float[][] typeMinMax = minmax.get(type);
/*
* final java.awt.CheckboxMenuItem chb = new
* java.awt.CheckboxMenuItem("Vary Height"); // this is broken at the
*
* }); men.add(chb);
*/
- if (typeMinMax != null && ((float[][]) typeMinMax)[0] != null)
+ if (typeMinMax != null && typeMinMax[0] != null)
{
// graduated colourschemes for those where minmax exists for the
// positional features
mxcol.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
if (typeCol instanceof Color)
});
}
}
+
+ MenuItem selectContaining = new MenuItem(
+ MessageManager.getString("label.select_columns_containing"));
+ selectContaining.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ me.ap.alignFrame.avc.markColumnsContainingFeatures(false, false,
+ false, type);
+ }
+ });
+ men.add(selectContaining);
+
+ MenuItem selectNotContaining = new MenuItem(
+ MessageManager.getString("label.select_columns_not_containing"));
+ selectNotContaining.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ me.ap.alignFrame.avc.markColumnsContainingFeatures(true, false,
+ false, type);
+ }
+ });
+ men.add(selectNotContaining);
+
+ MenuItem hideContaining = new MenuItem(
+ MessageManager.getString("label.hide_columns_containing"));
+ hideContaining.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ hideFeatureColumns(type, true);
+ }
+ });
+ men.add(hideContaining);
+
+ MenuItem hideNotContaining = new MenuItem(
+ MessageManager.getString("label.hide_columns_not_containing"));
+ hideNotContaining.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ hideFeatureColumns(type, false);
+ }
+ });
+ men.add(hideNotContaining);
+
this.featurePanel.add(men);
men.show(this.featurePanel, x, y);
}
for (String group : fr.getFeatureGroups())
{
boolean vis = fr.checkGroupVisibility(group, false);
- Checkbox check = new MyCheckbox(group, vis,
- (fr.featureLinks != null && fr.featureLinks
- .containsKey(group)));
+ Checkbox check = new MyCheckbox(group, vis, false);
check.addMouseListener(this);
check.setFont(new Font("Serif", Font.BOLD, 12));
check.addItemListener(groupItemListener);
{
SequenceFeature[] tmpfeatures;
String group = null, type;
- Vector visibleChecks = new Vector();
+ Vector<String> visibleChecks = new Vector<String>();
AlignmentI alignment = av.getAlignment();
for (int i = 0; i < alignment.getHeight(); i++)
{
// now add checkboxes which should be visible,
// if they have not already been added
- Enumeration en = visibleChecks.elements();
+ Enumeration<String> en = visibleChecks.elements();
while (en.hasMoreElements())
{
selected = true;
}
- check = new MyCheckbox(
- type,
- selected,
- (fr.featureLinks != null && fr.featureLinks.containsKey(type)),
+ check = new MyCheckbox(type, selected, false,
fr.getFeatureStyle(type));
check.addMouseListener(this);
}
}
+ @Override
public void actionPerformed(ActionEvent evt)
{
for (int i = 0; i < featurePanel.getComponentCount(); i++)
private ItemListener groupItemListener = new ItemListener()
{
+ @Override
public void itemStateChanged(ItemEvent evt)
{
Checkbox source = (Checkbox) evt.getSource();
};
};
+ @Override
public void itemStateChanged(ItemEvent evt)
{
selectionChanged();
boolean dragging = false;
- public void mousePressed(MouseEvent evt)
- {
-
- selectedCheck = (MyCheckbox) evt.getSource();
-
- if (fr.featureLinks != null
- && fr.featureLinks.containsKey(selectedCheck.type))
- {
- if (evt.getX() > selectedCheck.stringWidth + 20)
- {
- evt.consume();
- }
- }
-
- }
-
+ @Override
public void mouseDragged(MouseEvent evt)
{
if (((Component) evt.getSource()).getParent() != featurePanel)
dragging = true;
}
+ @Override
public void mouseReleased(MouseEvent evt)
{
if (((Component) evt.getSource()).getParent() != featurePanel)
ap.paintAlignment(true);
}
+ @Override
public void mouseEntered(MouseEvent evt)
{
}
+ @Override
public void mouseExited(MouseEvent evt)
{
}
+ @Override
public void mouseClicked(MouseEvent evt)
{
MyCheckbox check = (MyCheckbox) evt.getSource();
{
this.popupSort(check, fr.getMinMax(), evt.getX(), evt.getY());
}
- if (fr.featureLinks != null && fr.featureLinks.containsKey(check.type))
- {
- if (evt.getX() > check.stringWidth + 20)
- {
- evt.consume();
- String link = fr.featureLinks.get(check.type).toString();
- ap.alignFrame.showURL(link.substring(link.indexOf("|") + 1),
- link.substring(0, link.indexOf("|")));
- }
- }
if (check.getParent() != featurePanel)
{
}
}
+ @Override
public void mouseMoved(MouseEvent evt)
{
}
+ @Override
public void adjustmentValueChanged(AdjustmentEvent evt)
{
fr.setTransparency((100 - transparency.getValue()) / 100f);
updateColor(featureStyle);
}
+ @Override
public void paint(Graphics g)
{
Dimension d = getSize();
}
}
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ }
+
+ /**
+ * Hide columns containing (or not containing) a given feature type
+ *
+ * @param type
+ * @param columnsContaining
+ */
+ void hideFeatureColumns(final String type,
+ boolean columnsContaining)
+ {
+ if (ap.alignFrame.avc.markColumnsContainingFeatures(
+ columnsContaining, false, false, type))
+ {
+ if (ap.alignFrame.avc.markColumnsContainingFeatures(
+ !columnsContaining, false, false, type))
+ {
+ ap.alignFrame.viewport.hideSelectedColumns();
+ }
+ }
+ }
+
}
git://source.jalview.org / jalview.git / blobdiff