{\r
Color currentColor = Color.white;\r
Color currentTextColor = Color.black;\r
+ Font italic = new Font(av.getFont().getName(), Font.ITALIC,\r
+ av.getFont().getSize());\r
\r
if (av.getWrapAlignment())\r
{\r
+ int annotationHeight = 0;\r
+ AnnotationLabels labels = null;\r
\r
- int rowSize = av.getEndRes() - av.getStartRes();\r
- // Draw the rest of the panels\r
-\r
- for (int ypos = 2 * av.charHeight, row = av.startRes;\r
- ypos <= getSize().height && row < av.alignment.getWidth();\r
- ypos += av.chunkHeight, row += rowSize)\r
+ if(av.showAnnotation)\r
{\r
- for (int i = starty; i < av.alignment.getHeight(); i++)\r
+ AnnotationPanel ap = new AnnotationPanel(av);\r
+ annotationHeight = ap.adjustPanelHeight();\r
+ labels = new AnnotationLabels(av);\r
+ }\r
+\r
+ int hgap = av.charHeight;\r
+ if (av.scaleAboveWrapped)\r
+ hgap += av.charHeight;\r
+\r
+ int cHeight = av.getAlignment().getHeight() * av.charHeight\r
+ + hgap\r
+ + annotationHeight;\r
+\r
+ int rowSize = av.getEndRes() - av.getStartRes();\r
+\r
+ // Draw the rest of the panels\r
+ for (int ypos = hgap, row = av.startRes;\r
+ (ypos <= getSize().height) && (row < av.alignment.getWidth());\r
+ ypos += cHeight, row += rowSize)\r
{\r
- SequenceI s = av.alignment.getSequenceAt(i);\r
- drawIdString(gg, s, i, 0, ypos);\r
+ for (int i = starty; i < av.alignment.getHeight(); i++)\r
+ {\r
+ SequenceI s = av.alignment.getSequenceAt(i);\r
+ drawIdString(gg, s, i, 0, ypos);\r
+ }\r
+\r
+ if(labels!=null)\r
+ {\r
+ gg.setFont(av.getFont());\r
+ gg.translate(0, ypos+(av.getAlignment().getHeight() * av.charHeight));\r
+ labels.drawComponent(gg, getSize().width);\r
+ gg.translate(0, -ypos-(av.getAlignment().getHeight() * av.charHeight));\r
+ gg.setFont(italic);\r
+ }\r
}\r
- }\r
\r
}\r
else\r