/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.appletgui;
idCanvas.addMouseMotionListener(this);
String label, url;
+ // TODO: add in group link parameter
if (av.applet != null)
{
for (int i = 1; i < 10; i++)
int seq = alignPanel.seqPanel.findSeq(e);
SequenceI sequence = av.getAlignment().getSequenceAt(seq);
-
+
// look for non-pos features
StringBuffer tooltiptext = new StringBuffer();
-
if (sequence.getDescription() != null)
{
tooltiptext.append(sequence.getDescription());
tooltiptext.append("\n");
}
-
+
SequenceFeature sf[] = sequence.getSequenceFeatures();
- for (int sl=0;sf!=null && sl<sf.length;sl++)
+ for (int sl = 0; sf != null && sl < sf.length; sl++)
{
- if (sf[sl].begin==sf[sl].end && sf[sl].begin==0)
+ if (sf[sl].begin == sf[sl].end && sf[sl].begin == 0)
{
- boolean nl=false;
- if (sf[sl].getFeatureGroup()!=null) { tooltiptext.append(sf[sl].getFeatureGroup()); nl=true;};
- if (sf[sl].getType()!=null) { tooltiptext.append(" "); tooltiptext.append(sf[sl].getType()); nl=true;};
- if (sf[sl].getDescription()!=null) { tooltiptext.append(" "); tooltiptext.append(sf[sl].getDescription()); nl=true;};
- if (sf[sl].getScore()!=Float.NaN && sf[sl].getScore()!=0f) { tooltiptext.append(" Score = "); tooltiptext.append(sf[sl].getScore()); nl=true;};
- if (sf[sl].getStatus()!=null && sf[sl].getStatus().length()>0) { tooltiptext.append(" ("); tooltiptext.append(sf[sl].getStatus()); tooltiptext.append(")");nl=true;};
- if (nl) {tooltiptext.append("\n"); }
+ boolean nl = false;
+ if (sf[sl].getFeatureGroup() != null)
+ {
+ tooltiptext.append(sf[sl].getFeatureGroup());
+ nl = true;
+ }
+ ;
+ if (sf[sl].getType() != null)
+ {
+ tooltiptext.append(" ");
+ tooltiptext.append(sf[sl].getType());
+ nl = true;
+ }
+ ;
+ if (sf[sl].getDescription() != null)
+ {
+ tooltiptext.append(" ");
+ tooltiptext.append(sf[sl].getDescription());
+ nl = true;
+ }
+ ;
+ if (sf[sl].getScore() != Float.NaN && sf[sl].getScore() != 0f)
+ {
+ tooltiptext.append(" Score = ");
+ tooltiptext.append(sf[sl].getScore());
+ nl = true;
+ }
+ ;
+ if (sf[sl].getStatus() != null && sf[sl].getStatus().length() > 0)
+ {
+ tooltiptext.append(" (");
+ tooltiptext.append(sf[sl].getStatus());
+ tooltiptext.append(")");
+ nl = true;
+ }
+ ;
+ if (nl)
+ {
+ tooltiptext.append("\n");
+ }
}
}
-
- if (tooltiptext.length()==0)
+
+ if (tooltiptext.length() == 0)
{
// nothing to display - so clear tooltip if one is visible
if (tooltip != null)
tooltip.setTip(sequence.getDisplayId(true) + "\n"
+ tooltiptext.toString());
}
- tooltiptext=null;
+ tooltiptext = null;
}
public void mouseDragged(MouseEvent e)
if ((e.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK)
{
- Sequence sq = (Sequence) av
- .getAlignment().getSequenceAt(seq);
- // build a new links menu based on the current links + any non-positional features
+ Sequence sq = (Sequence) av.getAlignment().getSequenceAt(seq);
+ // build a new links menu based on the current links + any non-positional
+ // features
Vector nlinks = new Vector();
- for (int l=0,lSize=links.size();l<lSize; l++)
+ for (int l = 0, lSize = links.size(); l < lSize; l++)
{
nlinks.addElement(links.elementAt(l));
}
SequenceFeature sf[] = sq.getSequenceFeatures();
- for (int sl=0;sf!=null && sl<sf.length;sl++)
+ for (int sl = 0; sf != null && sl < sf.length; sl++)
{
- if (sf[sl].begin==sf[sl].end && sf[sl].begin==0)
+ if (sf[sl].begin == sf[sl].end && sf[sl].begin == 0)
{
- if (sf[sl].links!=null && sf[sl].links.size()>0)
+ if (sf[sl].links != null && sf[sl].links.size() > 0)
{
- for (int l=0, lSize=sf[sl].links.size(); l<lSize; l++)
- {
+ for (int l = 0, lSize = sf[sl].links.size(); l < lSize; l++)
+ {
nlinks.addElement(sf[sl].links.elementAt(l));
}
}
}
}
-
+
APopupMenu popup = new APopupMenu(alignPanel, sq, nlinks);
this.add(popup);
popup.show(this, e.getX(), e.getY());
git://source.jalview.org / jalview.git / blobdiff