package jalview.appletgui;
import jalview.datamodel.AlignmentI;
+import jalview.util.ColorUtils;
import java.awt.Color;
import java.awt.Dimension;
{
miniMe = null;
int alwidth = av.getAlignment().getWidth();
- int alheight = av.getAlignment().getHeight();
+ int alheight = av.getAlignment().getHeight()
+ + av.getAlignment().getHiddenSequences().getSize();
if (av.isShowSequenceFeatures())
{
AlignmentI alignment = av.getAlignment();
for (row = 0; row <= sequencesHeight; row++)
{
+ if (resizeAgain)
+ {
+ break;
+ }
if ((int) (row * sampleRow) == lastrow)
{
sameRow++;
if (seq.getLength() > lastcol)
{
- color = sr.getResidueBoxColour(seq, lastcol);
+ color = ColorUtils.getColor(sr.getResidueBoxColour(seq, lastcol));
if (av.isShowSequenceFeatures())
{
- color = fr.findFeatureColour(color, seq, lastcol);
+ color = ColorUtils.getColor(fr.findFeatureColour(color, seq,
+ lastcol));
}
}
else
}
if (hiddenRow
- || (hasHiddenCols && !av.getColumnSelection()
- .isVisible(lastcol)))
+ || (hasHiddenCols && !av.getColumnSelection().isVisible(
+ lastcol)))
{
color = color.darker().darker();
}
{
for (col = 0; col < width; col++)
{
+ if (resizeAgain)
+ {
+ break;
+ }
lastcol = (int) (col * sampleCol);
{
mg.translate(col, sequencesHeight);