JAL-2438 FeatureColourFinder refactored from FeatureRenderer, fr not

[jalview.git] / src / jalview / appletgui / OverviewPanel.java

diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index 122401c..8427c77 100755 (executable)
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -21,6 +21,7 @@
 package jalview.appletgui;
 
 import jalview.datamodel.AlignmentI;
+import jalview.renderer.seqfeatures.FeatureColourFinder;
 
 import java.awt.Color;
 import java.awt.Dimension;
@@ -303,6 +304,8 @@ public class OverviewPanel extends Panel implements Runnable,
             .hasHiddenColumns();
     boolean hiddenRow = false;
     AlignmentI alignment = av.getAlignment();
+
+    FeatureColourFinder finder = new FeatureColourFinder(fr);
     for (row = 0; row <= sequencesHeight; row++)
     {
       if (resizeAgain)
@@ -353,7 +356,7 @@ public class OverviewPanel extends Panel implements Runnable,
 
           if (av.isShowSequenceFeatures())
           {
-            color = fr.findFeatureColour(color, seq, lastcol);
+            color = finder.findFeatureColour(color, seq, lastcol);
           }
         }
         else