\r
import jalview.analysis.*;\r
import jalview.datamodel.*;\r
-import jalview.jbappletgui.*;\r
+\r
\r
public class PCAPanel\r
- extends GPCAPanel implements Runnable\r
+ extends Frame implements Runnable\r
{\r
PCA pca;\r
int top;\r
\r
public PCAPanel(AlignViewport av)\r
{\r
+ try\r
+ {\r
+ jbInit();\r
+ }\r
+ catch (Exception e)\r
+ {\r
+ e.printStackTrace();\r
+ }\r
+\r
+ for (int i = 1; i < 8; i++)\r
+ {\r
+ xCombobox.addItem("dim " + i);\r
+ yCombobox.addItem("dim " + i);\r
+ zCombobox.addItem("dim " + i);\r
+ }\r
+\r
this.av = av;\r
if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize() > 3)\r
{\r
{\r
rc.showLabels( labels.getState() );\r
}\r
+ Panel jPanel2 = new Panel();\r
+ Label jLabel1 = new Label();\r
+ Label jLabel2 = new Label();\r
+ Label jLabel3 = new Label();\r
+ protected Choice xCombobox = new Choice();\r
+ protected Choice yCombobox = new Choice();\r
+ protected Choice zCombobox = new Choice();\r
+ FlowLayout flowLayout1 = new FlowLayout();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ MenuBar menuBar1 = new MenuBar();\r
+ Menu menu1 = new Menu();\r
+ Menu menu2 = new Menu();\r
+ protected CheckboxMenuItem labels = new CheckboxMenuItem();\r
+ MenuItem values = new MenuItem();\r
+\r
+ private void jbInit()\r
+ throws Exception\r
+ {\r
+ this.setLayout(borderLayout1);\r
+ jPanel2.setLayout(flowLayout1);\r
+ jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ jLabel1.setText("x=");\r
+ jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ jLabel2.setText("y=");\r
+ jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ jLabel3.setText("z=");\r
+ jPanel2.setBackground(Color.white);\r
+ zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ zCombobox.addItemListener(new java.awt.event.ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent e)\r
+ {\r
+ zCombobox_actionPerformed(null);\r
+ }\r
+ });\r
+ yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ yCombobox.addItemListener(new java.awt.event.ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent e)\r
+ {\r
+ yCombobox_actionPerformed(null);\r
+ }\r
+ });\r
+ xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ xCombobox.addItemListener(new java.awt.event.ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent e)\r
+ {\r
+ xCombobox_actionPerformed(null);\r
+ }\r
+ });\r
+ this.setMenuBar(menuBar1);\r
+ menu1.setLabel("File");\r
+ menu2.setLabel("View");\r
+ labels.setLabel("Labels");\r
+ labels.addItemListener(new ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent itemEvent)\r
+ {\r
+ labels_itemStateChanged(itemEvent);\r
+ }\r
+ });\r
+ values.setLabel("Output Values...");\r
+ values.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent actionEvent)\r
+ {\r
+ values_actionPerformed(actionEvent);\r
+ }\r
+ });\r
+ this.add(jPanel2, BorderLayout.SOUTH);\r
+ jPanel2.add(jLabel1, null);\r
+ jPanel2.add(xCombobox, null);\r
+ jPanel2.add(jLabel2, null);\r
+ jPanel2.add(yCombobox, null);\r
+ jPanel2.add(jLabel3, null);\r
+ jPanel2.add(zCombobox, null);\r
+ menuBar1.add(menu1);\r
+ menuBar1.add(menu2);\r
+ menu2.add(labels);\r
+ menu1.add(values);\r
+ }\r
\r
}\r