}\r
\r
this.av = av;\r
- if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize() > 3)\r
+ if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize(false) > 3)\r
{\r
- seqs = new Sequence[av.getSelectionGroup().getSize()];\r
- for (int i = 0; i < av.getSelectionGroup().getSize(); i++)\r
+ seqs = new Sequence[av.getSelectionGroup().getSize(false)];\r
+ for (int i = 0; i < av.getSelectionGroup().getSize(false); i++)\r
{\r
seqs[i] = av.getSelectionGroup().getSequenceAt(i);\r
}\r
*/\r
public void run()\r
{\r
- pca = new PCA(seqs);\r
+ pca = null;//new PCA(seqs);\r
pca.run();\r
\r
// Now find the component coordinates\r