{
nuclSetting.setState(pcaModel.isNucleotide());
protSetting.setState(!pcaModel.isNucleotide());
- pcaModel.run();
+ pcaModel.calculate();
// ////////////////
xCombobox.select(0);
yCombobox.select(1);
int dim2 = top - yCombobox.getSelectedIndex();
int dim3 = top - zCombobox.getSelectedIndex();
pcaModel.updateRcView(dim1, dim2, dim3);
- rc.img = null;
- rc.rotmat.setIdentity();
- rc.initAxes();
+ rc.resetView();
rc.paint(rc.getGraphics());
}
{
}
;
- Object[] alAndColsel = pcaModel.getSeqtrings()
+ Object[] alAndColsel = pcaModel.getInputData()
.getAlignmentAndHiddenColumns(gc);
if (alAndColsel != null && alAndColsel[0] != null)