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[jalview.git] / src / jalview / appletgui / PaintRefresher.java

diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java
index 422257b..d040452 100755 (executable)
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  * 
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -26,7 +26,7 @@ import jalview.datamodel.*;
 
 /**
  * DOCUMENT ME!
- *
+ * 
  * @author $author$
  * @version $Revision$
  */
@@ -36,9 +36,11 @@ public class PaintRefresher
 
   /**
    * DOCUMENT ME!
-   *
-   * @param comp DOCUMENT ME!
-   * @param al DOCUMENT ME!
+   * 
+   * @param comp
+   *                DOCUMENT ME!
+   * @param al
+   *                DOCUMENT ME!
    */
   public static void Register(Component comp, String seqSetId)
   {
@@ -88,10 +90,8 @@ public class PaintRefresher
     Refresh(source, id, false, false);
   }
 
-  public static void Refresh(Component source,
-                             String id,
-                             boolean alignmentChanged,
-                             boolean validateSequences)
+  public static void Refresh(Component source, String id,
+          boolean alignmentChanged, boolean validateSequences)
   {
     if (components == null)
     {
@@ -120,17 +120,16 @@ public class PaintRefresher
       {
         comps.removeElement(comp);
       }
-      else if (validateSequences
-               && comp instanceof AlignmentPanel
-               && source instanceof AlignmentPanel)
+      else if (validateSequences && comp instanceof AlignmentPanel
+              && source instanceof AlignmentPanel)
       {
-        validateSequences( ( (AlignmentPanel) source).av.alignment,
-                          ( (AlignmentPanel) comp).av.alignment);
+        validateSequences(((AlignmentPanel) source).av.alignment,
+                ((AlignmentPanel) comp).av.alignment);
       }
 
       if (comp instanceof AlignmentPanel && alignmentChanged)
       {
-        ( (AlignmentPanel) comp).alignmentChanged();
+        ((AlignmentPanel) comp).alignmentChanged();
       }
 
       comp.repaint();
@@ -142,7 +141,8 @@ public class PaintRefresher
     SequenceI[] a1;
     if (source.getHiddenSequences().getSize() > 0)
     {
-      a1 = source.getHiddenSequences().getFullAlignment().getSequencesArray();
+      a1 = source.getHiddenSequences().getFullAlignment()
+              .getSequencesArray();
     }
     else
     {
@@ -193,7 +193,8 @@ public class PaintRefresher
 
         if (comp.getHiddenSequences().getSize() > 0)
         {
-          a2 = comp.getHiddenSequences().getFullAlignment().getSequencesArray();
+          a2 = comp.getHiddenSequences().getFullAlignment()
+                  .getSequencesArray();
         }
         else
         {