JAL-1250 Redundancy removal bug fix for Applet version

[jalview.git] / src / jalview / appletgui / RedundancyPanel.java

diff --git a/src/jalview/appletgui/RedundancyPanel.java b/src/jalview/appletgui/RedundancyPanel.java
index d688261..1547862 100644 (file)
--- a/src/jalview/appletgui/RedundancyPanel.java
+++ b/src/jalview/appletgui/RedundancyPanel.java
@@ -53,7 +53,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
     applyButton.setVisible(true);
     allGroupsCheck.setVisible(false);
 
-    label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
+    label.setText(MessageManager
+            .getString("label.enter_redundancy_threshold"));
     valueField.setText("100");
 
     slider.setVisibleAmount(1);
@@ -72,8 +73,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
 
     frame = new Frame();
     frame.add(this);
-    jalview.bin.JalviewLite.addFrame(frame,
-            MessageManager.getString("label.redundancy_threshold_selection"), 400, 100);
+    jalview.bin.JalviewLite.addFrame(frame, MessageManager
+            .getString("label.redundancy_threshold_selection"), 400, 100);
 
     frame.addWindowListener(this);
 
@@ -127,7 +128,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
 
     redundancy = AlignSeq.computeRedundancyMatrix(originalSequences,
             omitHidden, start, end, false);
-    label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
+    label.setText(MessageManager
+            .getString("label.enter_redundancy_threshold"));
     slider.setVisible(true);
     applyButton.setEnabled(true);
     valueField.setVisible(true);
@@ -194,7 +196,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
         }
       }
 
-      EditCommand cut = new EditCommand("Remove Redundancy",
+      EditCommand cut = new EditCommand(MessageManager.getString("action.remove_redundancy"),
               EditCommand.CUT, deleted, 0, width, ap.av.getAlignment());
       AlignmentI alignment = ap.av.getAlignment();
       for (int i = 0; i < del.size(); i++)
@@ -211,8 +213,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
       ap.alignFrame.addHistoryItem(cut);
 
       PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
-      // ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
-      // .getSequences());
+       ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
     }
 
   }
@@ -226,6 +227,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
     {
       ap.av.historyList.removeElement(command);
       ap.alignFrame.updateEditMenuBar();
+      ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
     }
 
     ap.paintAlignment(true);