Hidden representatives moved from sequence to viewport

[jalview.git] / src / jalview / appletgui / RotatableCanvas.java

diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java
index 667653f..36e0859 100755 (executable)
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -99,7 +99,7 @@ public class RotatableCanvas
   {\r
     this.points = points;\r
     this.npoint = npoint;\r
-    PaintRefresher.Register(this, av.alignment);\r
+    PaintRefresher.Register(this, av.getSequenceSetId());\r
 \r
     prefsize = getPreferredSize();\r
     orig = new float[npoint][3];\r
@@ -382,7 +382,7 @@ public class RotatableCanvas
 \r
       if (av.getSelectionGroup() != null)\r
       {\r
-        if (av.getSelectionGroup().getSequences(false).contains( ( (SequencePoint) points.\r
+        if (av.getSelectionGroup().getSequences(null).contains( ( (SequencePoint) points.\r
             elementAt(i)).sequence))\r
         {\r
           g.setColor(Color.gray);\r
@@ -498,7 +498,7 @@ public class RotatableCanvas
       {\r
         av.getSelectionGroup().addOrRemove(found, true);\r
         av.getSelectionGroup().setEndRes(av.alignment.getWidth()-1);\r
-        PaintRefresher.Refresh(this, av.alignment);\r
+        PaintRefresher.Refresh(this, av.getSequenceSetId());\r
       }\r
       else\r
       {\r
@@ -577,7 +577,7 @@ public class RotatableCanvas
       {\r
         if (av != null)\r
         {\r
-          if (!av.getSelectionGroup().getSequences(false).contains(sp.sequence))\r
+          if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence))\r
           {\r
             av.getSelectionGroup().addSequence(sp.sequence, true);\r
           }\r