Colours in viewport

[jalview.git] / src / jalview / appletgui / RotatableCanvas.java

diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java
index 03b13db..667653f 100755 (executable)
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -371,13 +371,13 @@ public class RotatableCanvas
       int y = (int) ( (float) (sp.coord[1] - centre[1]) * scale) + halfheight;\r
       float z = sp.coord[1] - centre[2];\r
 \r
-      if (sp.sequence.getColor() == Color.black)\r
+      if (av.getSequenceColour(sp.sequence) == Color.black)\r
       {\r
         g.setColor(Color.white);\r
       }\r
       else\r
       {\r
-        g.setColor(sp.sequence.getColor());\r
+        g.setColor(av.getSequenceColour(sp.sequence));\r
       }\r
 \r
       if (av.getSelectionGroup() != null)\r