Save text colours

[jalview.git] / src / jalview / appletgui / SeqCanvas.java

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index e947f7a..0f8f930 100755 (executable)
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -1,6 +1,6 @@
 /*\r
  * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
  *\r
  * This program is free software; you can redistribute it and/or\r
  * modify it under the terms of the GNU General Public License\r
@@ -532,9 +532,9 @@ public class SeqCanvas
           {\r
             g1.setColor(Color.blue);\r
             g1.drawLine( (blockEnd - blockStart + 1) * av.charWidth - 1,\r
-                        startSeq + offset,\r
-                        (blockEnd - blockStart + 1) * av.charWidth - 1,\r
-                        startSeq + (endSeq - startSeq) * av.charHeight + offset);\r
+                         0 + offset,\r
+                         (blockEnd - blockStart + 1) * av.charWidth - 1,\r
+                         (endSeq - startSeq) * av.charHeight + offset);\r
           }\r
 \r
           g1.translate( -screenY * av.charWidth, 0);\r
@@ -629,7 +629,7 @@ public class SeqCanvas
      int ex = -1;\r
      int groupIndex = -1;\r
 \r
-     if ( (group == null) && (group.getSize(false) > 0))\r
+     if ( (group == null) && (av.alignment.getGroups().size() > 0))\r
      {\r
        group = (SequenceGroup) av.alignment.getGroups().elementAt(0);\r
        groupIndex = 0;\r