JAL-1551 JAL-962 formatting and code change ripples from changing HiddenColumns ...

[jalview.git] / src / jalview / appletgui / SeqCanvas.java

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 53cca3c..81e5dae 100755 (executable)
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -20,9 +20,16 @@
  */
 package jalview.appletgui;
 
-import java.awt.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SearchResults;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
 
-import jalview.datamodel.*;
+import java.awt.Color;
+import java.awt.FontMetrics;
+import java.awt.Graphics;
+import java.awt.Image;
+import java.awt.Panel;
 
 public class SeqCanvas extends Panel
 {
@@ -516,7 +523,8 @@ public class SeqCanvas extends Panel
     }
     else
     {
-      java.util.Vector regions = av.getColumnSelection().getHiddenColumns();
+      java.util.List<int[]> regions = av.getColumnSelection()
+              .getHiddenColumns();
 
       int screenY = 0;
       int blockStart = startRes;
@@ -524,7 +532,7 @@ public class SeqCanvas extends Panel
 
       for (int i = 0; i < regions.size(); i++)
       {
-        int[] region = (int[]) regions.elementAt(i);
+        int[] region = regions.get(i);
         int hideStart = region[0];
         int hideEnd = region[1];
 
@@ -646,7 +654,7 @@ public class SeqCanvas extends Panel
 
     if ((group == null) && (av.getAlignment().getGroups().size() > 0))
     {
-      group = (SequenceGroup) av.getAlignment().getGroups().get(0);
+      group = av.getAlignment().getGroups().get(0);
       groupIndex = 0;
     }
 
@@ -803,7 +811,7 @@ public class SeqCanvas extends Panel
           break;
         }
 
-        group = (SequenceGroup) av.getAlignment().getGroups()
+        group = av.getAlignment().getGroups()
                 .get(groupIndex);
       } while (groupIndex < av.getAlignment().getGroups().size());