seqCanvas.highlightSearchResults(highlight);
seqCanvas.getFeatureRenderer().amendFeatures(
Collections.singletonList(sequence), features, false, ap);
- seqCanvas.highlightSearchResults(null);
+ av.setSearchResults(null); // clear highlighting
+ seqCanvas.repaint(); // draw new/amended features
}
}
}
int res = 0;
int x = evt.getX();
+ int startRes = av.getRanges().getStartRes();
if (av.getWrapAlignment())
{
int y = evt.getY();
y -= hgap;
- x -= seqCanvas.LABEL_WEST;
+ x = Math.max(0, x - seqCanvas.LABEL_WEST);
int cwidth = seqCanvas.getWrappedCanvasWidth(getSize().width);
if (cwidth < 1)
}
wrappedBlock = y / cHeight;
- wrappedBlock += av.getRanges().getStartRes() / cwidth;
-
- res = wrappedBlock * cwidth + x / av.getCharWidth();
-
+ wrappedBlock += startRes / cwidth;
+ int startOffset = startRes % cwidth; // in case start is scrolled right
+ // from 0
+ res = wrappedBlock * cwidth + startOffset
+ + +Math.min(cwidth - 1, x / av.getCharWidth());
}
else
{
- res = (x / av.getCharWidth()) + av.getRanges().getStartRes();
+ res = (x / av.getCharWidth()) + startRes;
}
if (av.hasHiddenColumns())
// Find the next gap before the end
// of the visible region boundary
boolean blank = false;
- for (fixedRight = fixedRight; fixedRight > lastres; fixedRight--)
+ for (; fixedRight > lastres; fixedRight--)
{
blank = true;
}
if (copycolsel
&& av.hasHiddenColumns()
- && (av.getColumnSelection() == null || av.getAlignment()
- .getHiddenColumns().getHiddenRegions() == null))
+ && (av.getColumnSelection() == null))
{
System.err.println("Bad things");
}