Merge branch 'develop' into features/mchmmer

[jalview.git] / src / jalview / appletgui / SeqPanel.java

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index d74bbb7..285c737 100644 (file)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -647,7 +647,7 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     if (av.hasHiddenColumns())
     {
       res = av.getAlignment().getHiddenColumns()
-              .adjustForHiddenColumns(res);
+              .visibleToAbsoluteColumn(res);
     }
 
     return res;
@@ -1123,9 +1123,9 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     {
       fixedColumns = true;
       int y1 = av.getAlignment().getHiddenColumns()
-              .getHiddenBoundaryLeft(startres);
+              .getNextHiddenBoundary(true, startres);
       int y2 = av.getAlignment().getHiddenColumns()
-              .getHiddenBoundaryRight(startres);
+              .getNextHiddenBoundary(false, startres);
 
       if ((insertGap && startres > y1 && lastres < y1)
               || (!insertGap && startres < y2 && lastres > y2))
@@ -1197,7 +1197,8 @@ public class SeqPanel extends Panel implements MouseMotionListener,
           if (sg.getSize() == av.getAlignment().getHeight())
           {
             if ((av.hasHiddenColumns() && startres < av.getAlignment()
-                    .getHiddenColumns().getHiddenBoundaryRight(startres)))
+                    .getHiddenColumns()
+                    .getNextHiddenBoundary(false, startres)))
             {
               endEditing();
               return;
@@ -1497,7 +1498,7 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     }
     // always do this - annotation has own state
     // but defer colourscheme update until hidden sequences are passed in
-    boolean vischange = stretchGroup.recalcConservation(true);
+    boolean vischange = stretchGroup.recalcAnnotations(true);
     // here we rely on stretchGroup == av.getSelection()
     needOverviewUpdate |= vischange && av.isSelectionDefinedGroup()
             && afterDrag;