ExactMapping is in pdbchain

[jalview.git] / src / jalview / appletgui / SeqPanel.java

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 9ed48b2..7c524ad 100755 (executable)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -290,6 +290,11 @@ public class SeqPanel
       }\r
     }\r
 \r
+    if(seqCanvas.pdbCanvas!=null && sequence==seqCanvas.pdbCanvas.sequence)\r
+    {\r
+      seqCanvas.pdbCanvas.highlightRes(sequence.findPosition(res));\r
+    }\r
+\r
     ap.alignFrame.statusBar.setText(text.toString());\r
 \r
     // use aa to see if the mouse pointer is on a\r
@@ -302,7 +307,7 @@ public class SeqPanel
       while (e.hasMoreElements())\r
       {\r
         SequenceFeature sf = (SequenceFeature) e.nextElement();\r
-        if (sf.getStart() <= sequence.findPosition(res) &&\r
+        if (sf.getBegin() <= sequence.findPosition(res) &&\r
             sf.getEnd() >= sequence.findPosition(res))\r
         {\r
           if (sbuffer.length() > 0)\r