Merge branch 'develop' into features/JAL-2094_colourInterface

[jalview.git] / src / jalview / appletgui / SequenceRenderer.java

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index 970d20e..276ad9e 100755 (executable)
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -20,9 +20,11 @@
  */
 package jalview.appletgui;
 
+import jalview.api.ColorI;
 import jalview.api.FeatureRenderer;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.schemes.Colour;
 import jalview.schemes.ColourSchemeI;
 
 import java.awt.Color;
@@ -70,7 +72,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   }
 
   @Override
-  public Color getResidueBoxColour(SequenceI seq, int i)
+  public ColorI getResidueBoxColour(SequenceI seq, int i)
   {
     allGroups = av.getAlignment().findAllGroups(seq);
 
@@ -86,7 +88,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
       getBoxColour(av.getGlobalColourScheme(), seq, i);
     }
 
-    return resBoxColour;
+    return new Colour(resBoxColour);
   }
 
   /**
@@ -100,12 +102,12 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
    * @return
    */
   @Override
-  public Color getResidueColour(final SequenceI seq, int position,
+  public ColorI getResidueColour(final SequenceI seq, int position,
           FeatureRenderer fr)
   {
     // TODO replace 8 or so code duplications with calls to this method
     // (refactored as needed)
-    Color col = getResidueBoxColour(seq, position);
+    ColorI col = getResidueBoxColour(seq, position);
 
     if (fr != null)
     {