Highlight from alignment

[jalview.git] / src / jalview / appletgui / SequenceRenderer.java

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index d546634..b985cea 100755 (executable)
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -64,6 +64,7 @@ public class SequenceRenderer
 \r
   public Color findSequenceColour(SequenceI seq, int i)\r
   {\r
+    allGroups = av.alignment.findAllGroups(seq);\r
     drawBoxes(seq, i,i, 0, 0, 1,1);\r
     return resBoxColour;\r
   }\r