Commands, history, consensus, refresh updated

[jalview.git] / src / jalview / appletgui / TreeCanvas.java

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index 1c1e7cf..8b68489 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -65,7 +65,7 @@ public class TreeCanvas
     addMouseMotionListener(this);\r
     setLayout(null);\r
 \r
-    PaintRefresher.Register(this, av.alignment);\r
+    PaintRefresher.Register(this, av.getSequenceSetId());\r
   }\r
 \r
   public void treeSelectionChanged(SequenceI sequence)\r
@@ -472,7 +472,7 @@ public class TreeCanvas
         }\r
       }\r
 \r
-      PaintRefresher.Refresh(this, av.alignment);\r
+      PaintRefresher.Refresh(this, av.getSequenceSetId());\r
       repaint();\r
     }\r
   }\r
@@ -514,7 +514,7 @@ public class TreeCanvas
     if (ob instanceof SequenceI)\r
     {\r
       treeSelectionChanged( (Sequence) ob);\r
-      PaintRefresher.Refresh(this, av.alignment);\r
+      PaintRefresher.Refresh(this, av.getSequenceSetId());\r
       repaint();\r
       return;\r
     }\r
@@ -533,14 +533,14 @@ public class TreeCanvas
 \r
         av.setSelectionGroup(null);\r
         av.alignment.deleteAllGroups();\r
-        av.sequenceColours.clear();\r
+        av.sequenceColours=null;\r
 \r
         colourGroups();\r
 \r
       }\r
     }\r
 \r
-    PaintRefresher.Refresh(this, av.alignment);\r
+    PaintRefresher.Refresh(this, av.getSequenceSetId());\r
     repaint();\r
 \r
   }\r