JAL-564 (annotation panel height adjustment) and alignment annotation popup menu...

[jalview.git] / src / jalview / appletgui / TreeCanvas.java

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index d40ab73..a9a4bfe 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -64,9 +64,11 @@ public class TreeCanvas extends Panel implements MouseListener,
 
   SequenceNode highlightNode;
 
-  public TreeCanvas(AlignViewport av, ScrollPane scroller)
+  AlignmentPanel ap; 
+  public TreeCanvas(AlignmentPanel ap, ScrollPane scroller)
   {
-    this.av = av;
+    this.ap = ap;
+    this.av = ap.av;
     font = av.getFont();
     scrollPane = scroller;
     addMouseListener(this);
@@ -508,6 +510,7 @@ public class TreeCanvas extends Panel implements MouseListener,
 
       PaintRefresher.Refresh(this, av.getSequenceSetId());
       repaint();
+      av.sendSelection();
     }
   }
 
@@ -550,6 +553,7 @@ public class TreeCanvas extends Panel implements MouseListener,
       treeSelectionChanged((Sequence) ob);
       PaintRefresher.Refresh(this, av.getSequenceSetId());
       repaint();
+      av.sendSelection();
       return;
     }
     else if (!(ob instanceof SequenceNode))
@@ -647,7 +651,8 @@ public class TreeCanvas extends Panel implements MouseListener,
       av.alignment.addGroup(sg);
 
     }
-
+    ap.updateAnnotation();
+    
   }
 
   public void setShowDistances(boolean state)