sequences are private in SequenceGroup

[jalview.git] / src / jalview / appletgui / TreeCanvas.java

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index e3f6c3c..af1d752 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -188,7 +188,7 @@ public class TreeCanvas
       // Colour selected leaves differently\r
       SequenceGroup selected = av.getSelectionGroup();\r
       if (selected != null &&\r
-          selected.sequences.contains( (SequenceI) node.element()))\r
+          selected.getSequences(false).contains( (SequenceI) node.element()))\r
       {\r
         g.setColor(Color.gray);\r
 \r
@@ -523,7 +523,8 @@ public class TreeCanvas
             {\r
             Conservation c = new Conservation("Group",\r
                                               ResidueProperties.propHash, 3,\r
-                                              sg.sequences, sg.getStartRes(),\r
+                                              sg.getSequences(false),\r
+                                              sg.getStartRes(),\r
                                               sg.getEndRes());\r
 \r
             c.calculate();\r