Vector<SequenceNode> l = tree.findLeaves(groups.get(i));
- Vector<SequenceI> sequences = new Vector<SequenceI>();
+ Vector<SequenceI> sequences = new Vector<>();
for (int j = 0; j < l.size(); j++)
{
SequenceI s1 = (SequenceI) l.elementAt(j).element();
}
else
{
- cs = ColourSchemeProperty.getColourScheme(sg, ColourSchemeProperty
+ cs = ColourSchemeProperty.getColourScheme(av, sg,
+ ColourSchemeProperty
.getColourName(av.getGlobalColourScheme()));
}
// cs is null if shading is an annotationColourGradient