import java.util.*;\r
\r
import java.awt.event.*;\r
+import java.awt.*;\r
\r
import jalview.analysis.*;\r
import jalview.datamodel.*;\r
import jalview.io.*;\r
-import jalview.jbappletgui.*;\r
\r
-public class TreePanel\r
- extends GTreePanel\r
+public class TreePanel extends Frame\r
{\r
SequenceI[] seq;\r
String type;\r
public TreePanel(AlignViewport av, Vector seqVector, String type,\r
String pwtype, int s, int e)\r
{\r
- super();\r
- initTreePanel(av, seqVector, type, pwtype, s, e, null);\r
+ try\r
+ {\r
+ jbInit();\r
+ this.setMenuBar(jMenuBar1);\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
+ }\r
\r
- // We know this tree has distances. JBPNote TODO: prolly should add this as a userdefined default\r
- treeCanvas.setShowDistances(true);\r
+ initTreePanel(av, seqVector, type, pwtype, s, e, null);\r
}\r
\r
/**\r
public TreePanel(AlignViewport av, Vector seqVector, NewickFile newtree,\r
String type, String pwtype)\r
{\r
- super();\r
+ try\r
+ {\r
+ jbInit();\r
+ this.setMenuBar(jMenuBar1);\r
+ }\r
+ catch (Exception e)\r
+ {\r
+ e.printStackTrace();\r
+ }\r
+\r
initTreePanel(av, seqVector, type, pwtype, 0, seqVector.size(), newtree);\r
}\r
\r
treeCanvas = new TreeCanvas(av, scrollPane);\r
scrollPane.add(treeCanvas);\r
\r
+\r
TreeLoader tl = new TreeLoader(newTree);\r
tl.start();\r
\r
\r
public void run()\r
{\r
- NJTree tree;\r
if(newtree!=null)\r
tree = new NJTree(seq, newtree);\r
else\r
treeCanvas.setTree(tree);\r
if(newtree!=null)\r
{\r
+ distanceMenu.setState(newtree.HasDistances());\r
+ bootstrapMenu.setState(newtree.HasBootstrap());\r
treeCanvas.setShowBootstrap(newtree.HasBootstrap());\r
treeCanvas.setShowDistances(newtree.HasDistances());\r
}\r
protected void fitToWindow_actionPerformed(ActionEvent e)\r
{\r
treeCanvas.fitToWindow = fitToWindow.getState();\r
- repaint();\r
+ treeCanvas.repaint();\r
}\r
\r
public void newickOutput_actionPerformed(ActionEvent actionEvent)\r
jalview.bin.JalviewLite.addFrame(frame, type + " " + pwtype, 500, 100);\r
}\r
\r
- protected void fontSize_actionPerformed(ActionEvent e)\r
+ public java.awt.Font getTreeFont()\r
{\r
- /* if( treeCanvas==null )\r
- return;\r
+ return treeCanvas.font;\r
+ }\r
\r
- String size = fontSize.getLabel().substring( fontSize.getLabel().indexOf("-")+1);\r
+ public void setTreeFont(java.awt.Font font)\r
+ {\r
+ treeCanvas.font = font;\r
+ treeCanvas.repaint();\r
+ }\r
\r
- Object selection = JOptionPane.showInternalInputDialog(Desktop.desktop,\r
- "Select font size",\r
- "Font size",\r
- JOptionPane.QUESTION_MESSAGE,\r
- null, new String[]{"1","2","4","6","8","10","12","14","16","18","20"}\r
- ,"Font Size - "+size);\r
- if(selection!=null)\r
- {\r
- fontSize.setText("Font Size - " + selection);\r
+ protected void fontSize_actionPerformed(ActionEvent e)\r
+ {\r
+ if( treeCanvas==null )\r
+ return;\r
\r
- int i = Integer.parseInt(selection.toString());\r
- treeCanvas.setFontSize(i);\r
- }\r
- scrollPane.setViewportView(treeCanvas);\r
- */\r
+ new FontChooser(this);\r
}\r
\r
protected void distanceMenu_actionPerformed(ActionEvent e)\r
treeCanvas.setMarkPlaceholders(placeholdersMenu.getState());\r
}\r
\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ protected ScrollPane scrollPane = new ScrollPane();\r
+ MenuBar jMenuBar1 = new MenuBar();\r
+ Menu jMenu2 = new Menu();\r
+ protected MenuItem fontSize = new MenuItem();\r
+ protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();\r
+ protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();\r
+ protected CheckboxMenuItem placeholdersMenu = new CheckboxMenuItem();\r
+ protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();\r
+ Menu fileMenu = new Menu();\r
+ MenuItem newickOutput = new MenuItem();\r
+\r
+ private void jbInit() throws Exception {\r
+ setLayout(borderLayout1);\r
+ this.setBackground(Color.white);\r
+ this.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ jMenu2.setLabel("View");\r
+ fontSize.setLabel("Font...");\r
+ fontSize.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ fontSize_actionPerformed(e);\r
+ }\r
+ });\r
+ bootstrapMenu.setLabel("Show Bootstrap Values");\r
+ bootstrapMenu.addItemListener(new java.awt.event.ItemListener() {\r
+ public void itemStateChanged(ItemEvent e) {\r
+ bootstrapMenu_actionPerformed(null);\r
+ }\r
+ });\r
+ distanceMenu.setLabel("Show Distances");\r
+ distanceMenu.addItemListener(new java.awt.event.ItemListener() {\r
+ public void itemStateChanged(ItemEvent e) {\r
+ distanceMenu_actionPerformed(null);\r
+ }\r
+ });\r
+ placeholdersMenu.setLabel("Mark Unassociated Leaves");\r
+ placeholdersMenu.addItemListener(new java.awt.event.ItemListener() {\r
+ public void itemStateChanged(ItemEvent e) {\r
+ placeholdersMenu_actionPerformed(null);\r
+ }\r
+ });\r
+ fitToWindow.setState(true);\r
+ fitToWindow.setLabel("Fit To Window");\r
+ fitToWindow.addItemListener(new java.awt.event.ItemListener() {\r
+ public void itemStateChanged(ItemEvent e) {\r
+ fitToWindow_actionPerformed(null);\r
+ }\r
+ });\r
+ fileMenu.setLabel("File");\r
+ newickOutput.setLabel("Newick Format");\r
+ newickOutput.addActionListener(new ActionListener() {\r
+ public void actionPerformed(ActionEvent actionEvent) {\r
+ newickOutput_actionPerformed(actionEvent);\r
+ }\r
+ });\r
+\r
+ add(scrollPane, BorderLayout.CENTER);\r
+ jMenuBar1.add(fileMenu);\r
+ jMenuBar1.add(jMenu2);\r
+ jMenu2.add(fitToWindow);\r
+ jMenu2.add(fontSize);\r
+ jMenu2.add(distanceMenu);\r
+ jMenu2.add(bootstrapMenu);\r
+ jMenu2.add(placeholdersMenu);\r
+ fileMenu.add(newickOutput);\r
+ }\r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff