// yields unaligned seqs)
// or create a selection box around columns in alignment view
// test Alignment(SeqCigar[])
- if (tree.seqData != null)
+ if (tree.getOriginalData() != null)
{
char gc = '-';
try
} catch (Exception ex)
{
}
- ;
- Object[] alAndColsel = tree.seqData
+
+ Object[] alAndColsel = tree.getOriginalData()
.getAlignmentAndColumnSelection(gc);
if (alAndColsel != null && alAndColsel[0] != null)
{
if (newtree != null)
{
- if (odata == null)
- {
- tree = new TreeModel(av.getAlignment().getSequencesArray(),
- newtree);
- }
- else
- {
- tree = new TreeModel(av.getAlignment().getSequencesArray(),
- odata, newtree);
- }
-
+ tree = new TreeModel(av.getAlignment().getSequencesArray(), odata,
+ newtree);
}
else
{