Button selectedButton;
- Vector<Color> oldColours = new Vector<Color>();
+ Vector<Color> oldColours = new Vector<>();
ColourSchemeI oldColourScheme;
Frame frame;
- MCview.AppletPDBCanvas pdbcanvas;
+ mc_view.AppletPDBCanvas pdbcanvas;
AppletJmol jmol;
init();
}
- public UserDefinedColours(MCview.AppletPDBCanvas pdb)
+ public UserDefinedColours(mc_view.AppletPDBCanvas pdb)
{
this.pdbcanvas = pdb;
init();
ap.av.isIgnoreGapsConsensus());
}
ap.seqPanel.seqCanvas.img = null;
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
}
else if (jmol != null)
{
- jmol.setJalviewColourScheme(ucs);
+ jmol.colourByJalviewColourScheme(ucs);
}
else if (pdbcanvas != null)
{
{
ap.av.setGlobalColourScheme(oldColourScheme);
}
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
}
frame.setVisible(false);