import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceGroup;
-import jalview.schemes.CollectionColourScheme;
+import jalview.renderer.ResidueShader;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.FeatureColour;
import jalview.schemes.ResidueProperties;
Color col = Color.white;
if (oldColourScheme != null && oldColourScheme.isSimple())
{
- col = oldColourScheme.findColour(aa.charAt(0));
+ col = oldColourScheme.findColour(aa.charAt(0), 0, null, null, 0f);
}
button.setBackground(col);
oldColours.addElement(col);
{
if (seqGroup != null)
{
- seqGroup.cs = new CollectionColourScheme(ucs);
+ seqGroup.cs = new ResidueShader(ucs);
seqGroup.getGroupColourScheme().setThreshold(0,
ap.av.isIgnoreGapsConsensus());
}
else
{
ap.av.setGlobalColourScheme(ucs);
- ap.av.getViewportColourScheme().setThreshold(0,
+ ap.av.getResidueShading().setThreshold(0,
ap.av.isIgnoreGapsConsensus());
}
ap.seqPanel.seqCanvas.img = null;
{
if (seqGroup != null)
{
- seqGroup.cs = new CollectionColourScheme(ucs);
+ seqGroup.cs = new ResidueShader(ucs);
}
else
{