Merge branch 'improvement/JAL-3830_remove_dock_icon_in_headless_mode' into merge...

[jalview.git] / src / jalview / bin / Cache.java

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index 7d329fd..3750d9d 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -407,9 +407,9 @@ public class Cache
           fis = new URL(propertiesFile).openStream();
           if (!Jalview.quiet())
           {
-            System.out.println(
+            jalview.bin.Console.outPrintln(
                     "Loading jalview properties from : " + propertiesFile);
-            System.out.println(
+            jalview.bin.Console.outPrintln(
                     "Disabling Jalview writing to user's local properties file.");
           }
           propsAreReadOnly = true;
@@ -440,7 +440,8 @@ public class Cache
       } catch (Exception ex)
       {
         if (!Jalview.quiet())
-          System.out.println("Error reading properties file: " + ex);
+          jalview.bin.Console
+                  .outPrintln("Error reading properties file: " + ex);
       }
     }
 
@@ -497,7 +498,8 @@ public class Cache
     } catch (Exception ex)
     {
       if (!Jalview.quiet())
-        System.out.println("Error reading author details: " + ex);
+        jalview.bin.Console
+                .outPrintln("Error reading author details: " + ex);
       authorDetails = null;
     }
     if (authorDetails == null)
@@ -583,10 +585,10 @@ public class Cache
             {
               if (!Jalview.quiet())
               {
-                System.out.println(
+                jalview.bin.Console.outPrintln(
                         "Non-fatal exception when checking version at "
                                 + remoteBuildPropertiesUrl + ":");
-                System.out.println(ex);
+                jalview.bin.Console.printStackTrace(ex);
               }
               remoteVersion = getProperty("VERSION");
             }
@@ -636,7 +638,7 @@ public class Cache
         url = Cache.class.getResource(resourcePath).toString();
       } catch (Exception ex)
       {
-        System.err.println("Failed to resolve resource " + resourcePath
+        jalview.bin.Console.errPrintln("Failed to resolve resource " + resourcePath
                 + ": " + ex.getMessage());
       }
     }
@@ -687,7 +689,8 @@ public class Cache
     } catch (Exception ex)
     {
       if (!Jalview.quiet())
-        System.out.println("Error reading build details: " + ex);
+        jalview.bin.Console
+                .outPrintln("Error reading build details: " + ex);
       applicationProperties.remove("VERSION");
     }
     String codeVersion = getProperty("VERSION");
@@ -707,8 +710,9 @@ public class Cache
     new BuildDetails(codeVersion, null, codeInstallation);
     if (printVersion && reportVersion)
     {
-      System.out.println(ChannelProperties.getProperty("app_name")
-              + " version: " + codeVersion + codeInstallation);
+      jalview.bin.Console
+              .outPrintln(ChannelProperties.getProperty("app_name")
+                      + " version: " + codeVersion + codeInstallation);
     }
   }
 
@@ -784,8 +788,8 @@ public class Cache
       } catch (NumberFormatException e)
       {
         if (!Jalview.quiet())
-          System.out.println("Error parsing int property '" + property
-                  + "' with value '" + string + "'");
+          jalview.bin.Console.outPrintln("Error parsing int property '"
+                  + property + "' with value '" + string + "'");
       }
     }
 
@@ -835,7 +839,7 @@ public class Cache
     } catch (Exception ex)
     {
       if (!Jalview.quiet())
-        System.out.println(
+        jalview.bin.Console.outPrintln(
                 "Error setting property: " + key + " " + obj + "\n" + ex);
     }
     return oldValue;
@@ -867,7 +871,7 @@ public class Cache
       } catch (Exception ex)
       {
         if (!Jalview.quiet())
-          System.out.println("Error saving properties: " + ex);
+          jalview.bin.Console.outPrintln("Error saving properties: " + ex);
       }
     }
   }
@@ -959,11 +963,6 @@ public class Cache
    */
   public static void initAnalytics()
   {
-    initAnalytics(false);
-  }
-
-  public static void initAnalytics(boolean headless)
-  {
     Plausible.setEnabled(true);
 
     String appName = ChannelProperties.getProperty("app_name") + " Desktop";
@@ -983,10 +982,6 @@ public class Cache
     pathParts.add(appName);
     pathParts.add(version);
     pathParts.add(APPLICATION_STARTED);
-    if (headless)
-    {
-      pathParts.add("headless");
-    }
     path = ("/" + String.join("/", pathParts)).replace(' ', '+');
     /*
     }
@@ -1066,7 +1061,7 @@ public class Cache
         return date_format.parse(val);
       } catch (Exception ex)
       {
-        System.err.println("Invalid or corrupt date in property '"
+        jalview.bin.Console.errPrintln("Invalid or corrupt date in property '"
                 + propertyName + "' : value was '" + val + "'");
       }
     }
@@ -1090,7 +1085,7 @@ public class Cache
         return Integer.valueOf(val);
       } catch (NumberFormatException x)
       {
-        System.err.println("Invalid integer in property '" + property
+        jalview.bin.Console.errPrintln("Invalid integer in property '" + property
                 + "' (value was '" + val + "')");
       }
     }
@@ -1155,7 +1150,8 @@ public class Cache
       } catch (Exception ex)
       {
         if (!Jalview.quiet())
-          System.out.println("Error loading User ColourFile\n" + ex);
+          jalview.bin.Console
+                  .outPrintln("Error loading User ColourFile\n" + ex);
       }
     }
     if (!files.equals(coloursFound.toString()))
@@ -1661,7 +1657,7 @@ public class Cache
       return null;
     if (!file.exists())
     {
-      System.err.println("Could not load bootstrap preferences file '"
+      jalview.bin.Console.errPrintln("Could not load bootstrap preferences file '"
               + filename + "'");
       return null;
     }
@@ -1678,11 +1674,11 @@ public class Cache
       }
     } catch (FileNotFoundException e)
     {
-      System.err.println("Could not find bootstrap preferences file '"
+      jalview.bin.Console.errPrintln("Could not find bootstrap preferences file '"
               + file.getAbsolutePath() + "'");
     } catch (IOException e)
     {
-      System.err.println(
+      jalview.bin.Console.errPrintln(
               "IOException when loading bootstrap preferences file '"
                       + file.getAbsolutePath() + "'");
     }