import jalview.ws.dbsources.das.datamodel.DasSourceRegistry;
import java.awt.Color;
-import java.io.*;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileOutputStream;
+import java.io.InputStream;
+import java.io.InputStreamReader;
import java.text.DateFormat;
import java.text.SimpleDateFormat;
-import java.util.*;
+import java.util.Date;
+import java.util.Properties;
-import org.apache.log4j.*;
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
/**
* Stores and retrieves Jalview Application Properties Lists and fields within
* <li>SHOW_QUALITY show alignment quality annotation</li>
* <li>SHOW_ANNOTATIONS show alignment annotation rows</li>
* <li>SHOW_CONSERVATION show alignment conservation annotation</li>
+ * <li>SORT_ANNOTATIONS currently either SEQUENCE_AND_TYPE or TYPE_AND_SEQUENCE</li>
* <li>CENTRE_COLUMN_LABELS centre the labels at each column in a displayed
* annotation row</li>
* <li>DEFAULT_COLOUR default colour scheme to apply for a new alignment</li>
if (log != null)
{
if (re != null)
+ {
log.debug("Caught runtime exception in googletracker init:", re);
+ }
if (ex != null)
+ {
log.warn(
"Failed to initialise GoogleTracker for Jalview Desktop with version "
+ vrs, ex);
+ }
if (err != null)
+ {
log.error(
"Whilst initing GoogleTracker for Jalview Desktop version "
+ vrs, err);
+ }
}
else
{