ported logo rendering and label fit to column width - but disabled due to 1.1 incompa...

[jalview.git] / src / jalview / bin / Cache.java

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index 621ded0..9c9b6b0 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -115,8 +115,12 @@ import org.biojava.dasobert.dasregistry.Das1Source;
  * <li>SORT_BY_TREE (false) sort the current alignment view according to the
  * order of a newly displayed tree</li>
  * <li>DBFETCH_USEPICR (false) use PICR to recover valid DB references from sequence ID strings before attempting retrieval from any datasource</li>
- * <li>
- * </li>
+ * <li>SHOW_GROUP_CONSENSUS (false) Show consensus annotation for groups in the alignment.</li>
+ * <li>SHOW_GROUP_CONSERVATION (false) Show conservation annotation for groups in the alignment.</li>
+ * <li>SHOW_CONSENSUS_HISTOGRAM (false) Show consensus annotation row's histogram.</li>
+ * <li>SHOW_CONSENSUS_LOGO (false) Show consensus annotation row's sequence logo.</li>
+ * 
+ * <li></li>
  * 
  * <li></li>
  *