* <li>SHOW_QUALITY show alignment quality annotation</li>
* <li>SHOW_ANNOTATIONS show alignment annotation rows</li>
* <li>SHOW_CONSERVATION show alignment conservation annotation</li>
+ * <li>SHOW_OCCUPANCY show alignment column ungapped count annotation</li>
* <li>SORT_ANNOTATIONS currently either SEQUENCE_AND_LABEL or
* LABEL_AND_SEQUENCE</li>
* <li>SHOW_AUTOCALC_ABOVE true to show autocalculated annotations above
{
return applicationProperties.getProperty(key);
}
-
/**
* These methods are used when checking if the saved preference is different
* to the default setting