JAL-3858 annotation .height is bigger than graphHeight so adjacent PAE matrices are...

[jalview.git] / src / jalview / bin / Console.java

diff --git a/src/jalview/bin/Console.java b/src/jalview/bin/Console.java
index a382ac7..30fd530 100644 (file)
--- a/src/jalview/bin/Console.java
+++ b/src/jalview/bin/Console.java
@@ -220,6 +220,11 @@ public class Console
     return JLogger.toLevel(level);
   }
 
+  public static JLogger getLogger()
+  {
+    return log;
+  }
+
   public static boolean initLogger()
   {
     return initLogger(null);
@@ -236,14 +241,17 @@ public class Console
       JLogger.LogLevel logLevel = JLogger.LogLevel.INFO;
 
       if (JLogger.isLevel(providedLogLevel))
+      {
         logLevel = Console.getLogLevel(providedLogLevel);
+      }
       else
+      {
         logLevel = getCachedLogLevel();
+      }
 
       if (!Platform.isJS())
       {
-        if (Jalview.getInstance() == null || (Jalview.getInstance() != null
-                && !Jalview.getInstance().quiet()))
+        if (!Jalview.quiet())
         {
           System.err.println(
                   "Setting initial log level to " + logLevel.name());