import javax.swing.*;
import jalview.gui.*;
-import jalview.io.FileParse;
import jalview.util.Platform;
/**
{
try
{
- String viprotocol = FileParse.checkProtocol(vamsasImport);
+ String viprotocol = jalview.io.AppletFormatAdapter.checkProtocol(vamsasImport);
if (viprotocol == jalview.io.FormatAdapter.FILE)
{
inSession = desktop.vamsasImport(new File(vamsasImport));
}
}
- protocol = FileParse.checkProtocol(file);
+ protocol = jalview.io.AppletFormatAdapter.checkProtocol(file);
format = new jalview.io.IdentifyFile().Identify(file, protocol);
data = aparser.getValue("groups", true);
if (data != null)
{
- af.parseFeaturesFile(data, FileParse.checkProtocol(data));
+ af.parseFeaturesFile(data, jalview.io.AppletFormatAdapter.checkProtocol(data));
System.out.println("Added " + data);
}
data = aparser.getValue("features", true);
if (data != null)
{
- af.parseFeaturesFile(data, FileParse.checkProtocol(data));
+ af.parseFeaturesFile(data, jalview.io.AppletFormatAdapter.checkProtocol(data));
System.out.println("Added " + data);
}
jalview.io.NewickFile fin = null;
try
{
- fin = new jalview.io.NewickFile(data, FileParse.checkProtocol(data));
+ fin = new jalview.io.NewickFile(data, jalview.io.AppletFormatAdapter.checkProtocol(data));
if (fin != null)
{
af.getViewport().setCurrentTree(