JAL-3416 Making FlatLaF default for macs due to a problem with VAqua not starting...

[jalview.git] / src / jalview / bin / Jalview.java

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 0c11808..1428906 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -20,6 +20,7 @@
  */
 package jalview.bin;
 
+import java.awt.Color;
 import java.io.BufferedReader;
 import java.io.File;
 import java.io.FileOutputStream;
@@ -44,11 +45,16 @@ import java.util.logging.ConsoleHandler;
 import java.util.logging.Level;
 import java.util.logging.Logger;
 
+import javax.swing.JOptionPane;
+import javax.swing.SwingUtilities;
 import javax.swing.UIManager;
 import javax.swing.UIManager.LookAndFeelInfo;
 
+import com.formdev.flatlaf.FlatLightLaf;
+import com.formdev.flatlaf.util.SystemInfo;
 import com.threerings.getdown.util.LaunchUtil;
 
+//import edu.stanford.ejalbert.launching.IBrowserLaunching;
 import groovy.lang.Binding;
 import groovy.util.GroovyScriptEngine;
 import jalview.ext.so.SequenceOntology;
@@ -71,6 +77,7 @@ import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ColourSchemeProperty;
 import jalview.util.ChannelProperties;
 import jalview.util.HttpUtils;
+import jalview.util.LaunchUtils;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
 import jalview.ws.jws2.Jws2Discoverer;
@@ -95,6 +102,10 @@ public class Jalview
   static
   {
     Platform.getURLCommandArguments();
+    Platform.addJ2SDirectDatabaseCall("https://www.jalview.org");
+    Platform.addJ2SDirectDatabaseCall("http://www.jalview.org");
+    Platform.addJ2SDirectDatabaseCall("http://www.compbio.dundee.ac.uk");
+    Platform.addJ2SDirectDatabaseCall("https://www.compbio.dundee.ac.uk");
   }
 
   /*
@@ -424,6 +435,35 @@ public class Jalview
        * @j2sIgnore
        */
       {
+
+        /**
+         * Check to see that the JVM version being run is suitable for the Java
+         * version this Jalview was compiled for. Popup a warning if not.
+         */
+        if (!LaunchUtils.checkJavaVersion())
+        {
+          Console.warn("The Java version being used (Java "
+                  + LaunchUtils.getJavaVersion()
+                  + ") may lead to problems. This installation of Jalview should be used with Java "
+                  + LaunchUtils.getJavaCompileVersion() + ".");
+
+          if (!LaunchUtils
+                  .getBooleanUserPreference("IGNORE_JVM_WARNING_POPUP"))
+          {
+            Object[] options = {
+                MessageManager.getString("label.continue") };
+            JOptionPane.showOptionDialog(null,
+                    MessageManager.formatMessage(
+                            "warning.wrong_jvm_version_message",
+                            LaunchUtils.getJavaVersion(),
+                            LaunchUtils.getJavaCompileVersion()),
+                    MessageManager
+                            .getString("warning.wrong_jvm_version_title"),
+                    JOptionPane.DEFAULT_OPTION, JOptionPane.WARNING_MESSAGE,
+                    null, options, options[0]);
+          }
+        }
+
         if (!aparser.contains("nowebservicediscovery"))
         {
           desktop.startServiceDiscovery();
@@ -471,15 +511,30 @@ public class Jalview
                   .println("CMD [-noquestionnaire] executed successfully!");
         }
 
-        if (!aparser.contains("nonews"))
+        if (!aparser.contains("nonews")
+                || Cache.getProperty("NONEWS") == null)
         {
           desktop.checkForNews();
         }
 
-        BioJsHTMLOutput.updateBioJS();
+        if (!aparser.contains("nohtmltemplates")
+                || Cache.getProperty("NOHTMLTEMPLATES") == null)
+        {
+          BioJsHTMLOutput.updateBioJS();
+        }
       }
     }
 
+    // Check if JVM and compile version might cause problems and log if it
+    // might.
+    if (headless && !Platform.isJS() && !LaunchUtils.checkJavaVersion())
+    {
+      Console.warn("The Java version being used (Java "
+              + LaunchUtils.getJavaVersion()
+              + ") may lead to problems. This installation of Jalview should be used with Java "
+              + LaunchUtils.getJavaCompileVersion() + ".");
+    }
+
     // Move any new getdown-launcher-new.jar into place over old
     // getdown-launcher.jar
     String appdirString = System.getProperty("getdownappdir");
@@ -852,8 +907,8 @@ public class Jalview
 
   private static void setLookAndFeel()
   {
-    // property laf = "crossplatform", "system", "gtk", "metal", "nimbus" or
-    // "mac"
+    // property laf = "crossplatform", "system", "gtk", "metal", "nimbus",
+    // "mac" or "flat"
     // If not set (or chosen laf fails), use the normal SystemLaF and if on Mac,
     // try Quaqua/Vaqua.
     String lafProp = System.getProperty("laf");
@@ -905,6 +960,13 @@ public class Jalview
         Console.error("Could not set requested laf=" + laf);
       }
       break;
+    case "flat":
+      lafSet = setFlatLookAndFeel();
+      if (!lafSet)
+      {
+        Console.error("Could not set requested laf=" + laf);
+      }
+      break;
     case "quaqua":
       lafSet = setQuaquaLookAndFeel();
       if (!lafSet)
@@ -1025,6 +1087,45 @@ public class Jalview
             "javax.swing.plaf.nimbus.NimbusLookAndFeel", false);
   }
 
+  private static boolean setFlatLookAndFeel()
+  {
+    boolean set = setSpecificLookAndFeel("flatlaf light",
+            "com.formdev.flatlaf.FlatLightLaf", false);
+    if (set)
+    {
+      if (Platform.isMac())
+      {
+        System.setProperty("apple.laf.useScreenMenuBar", "true");
+        System.setProperty("apple.awt.application.name",
+                ChannelProperties.getProperty("app_name"));
+        System.setProperty("apple.awt.application.appearance", "system");
+        if (SystemInfo.isMacFullWindowContentSupported
+                && Desktop.desktop != null)
+        {
+          Desktop.desktop.getRootPane()
+                  .putClientProperty("apple.awt.fullWindowContent", true);
+          Desktop.desktop.getRootPane()
+                  .putClientProperty("apple.awt.transparentTitleBar", true);
+        }
+
+        SwingUtilities.invokeLater(() -> {
+          FlatLightLaf.setup();
+        });
+      }
+
+      UIManager.put("TabbedPane.showTabSeparators", true);
+      UIManager.put("TabbedPane.tabSeparatorsFullHeight", true);
+      UIManager.put("TabbedPane.tabsOverlapBorder", true);
+      // UIManager.put("TabbedPane.hasFullBorder", true);
+      UIManager.put("TabbedPane.tabLayoutPolicy", "scroll");
+      UIManager.put("TabbedPane.scrollButtonsPolicy", "asNeeded");
+      UIManager.put("TabbedPane.smoothScrolling", true);
+      UIManager.put("TabbedPane.tabWidthMode", "compact");
+      UIManager.put("TabbedPane.selectedBackground", Color.white);
+    }
+    return set;
+  }
+
   private static boolean setQuaquaLookAndFeel()
   {
     return setSpecificLookAndFeel("quaqua",
@@ -1045,12 +1146,16 @@ public class Jalview
     System.setProperty("com.apple.mrj.application.apple.menu.about.name",
             ChannelProperties.getProperty("app_name"));
     System.setProperty("apple.laf.useScreenMenuBar", "true");
+    /*
+     * broken native LAFs on (ARM?) macbooks
     set = setQuaquaLookAndFeel();
     if ((!set) || !UIManager.getLookAndFeel().getClass().toString()
             .toLowerCase(Locale.ROOT).contains("quaqua"))
     {
       set = setVaquaLookAndFeel();
     }
+     */
+    set = setFlatLookAndFeel();
     return set;
   }
 
@@ -1112,7 +1217,8 @@ public class Jalview
               @Override
               public void run()
               {
-                Console.debug("Initialising googletracker for usage stats.");
+                Console.debug(
+                        "Initialising googletracker for usage stats.");
                 Cache.initGoogleTracker();
                 Console.debug("Tracking enabled.");
               }