JAL-1854 declare immutable class as final

[jalview.git] / src / jalview / bin / Jalview.java

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 2d068a4..3294c26 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -182,6 +182,7 @@ public class Jalview
    */
   void doMain(String[] args)
   {
+    System.setSecurityManager(null);
     System.out.println("Java version: "
             + System.getProperty("java.version"));
     System.out.println(System.getProperty("os.arch") + " "
@@ -327,7 +328,6 @@ public class Jalview
             Cache.log.debug("Starting questionnaire with default url: "
                     + defurl);
             desktop.checkForQuestionnaire(defurl);
-
           }
         }
       }
@@ -335,11 +335,12 @@ public class Jalview
       {
         System.err.println("CMD [-noquestionnaire] executed successfully!");
       }
-      desktop.checkForNews();
-    }
 
-    if (!isHeadlessMode())
-    {
+      if (!aparser.contains("nonews"))
+      {
+        desktop.checkForNews();
+      }
+
       BioJsHTMLOutput.updateBioJS();
     }
 
@@ -781,6 +782,7 @@ public class Jalview
                     + "-eps FILE\tCreate EPS file FILE from alignment.\n"
                     + "-questionnaire URL\tQueries the given URL for information about any Jalview user questionnaires.\n"
                     + "-noquestionnaire\tTurn off questionnaire check.\n"
+                    + "-nonews\tTurn off check for Jalview news.\n"
                     + "-nousagestats\tTurn off google analytics tracking for this session.\n"
                     + "-sortbytree OR -nosortbytree\tEnable or disable sorting of the given alignment by the given tree\n"
                     // +