report any problematic web service URLs ( JAL-343 )

[jalview.git] / src / jalview / bin / Jalview.java

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index b599f0f..39daac6 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
@@ -81,8 +81,9 @@ public class Jalview
             + System.getProperty("os.version"));
     if (new Platform().isAMac())
     {
-       System.setProperty("com.apple.mrj.application.apple.menu.about.name", "Jalview");
-       System.setProperty("apple.laf.useScreenMenuBar", "true");
+      System.setProperty("com.apple.mrj.application.apple.menu.about.name",
+              "Jalview");
+      System.setProperty("apple.laf.useScreenMenuBar", "true");
     }
 
     ArgsParser aparser = new ArgsParser(args);
@@ -412,7 +413,7 @@ public class Jalview
           ex.printStackTrace(System.err);
         }
       }
-      // todo - load PDB structure to alignment
+      // TODO - load PDB structure(s) to alignment JAL-629
       // (associate with identical sequence in alignment, or a specified
       // sequence)
 
@@ -553,7 +554,7 @@ public class Jalview
       }
     }
     // and finally, turn off batch mode indicator - if the desktop still exists
-    if (desktop!=null)
+    if (desktop != null)
     {
       desktop.setInBatchMode(false);
     }