import javax.swing.LookAndFeel;
import javax.swing.UIManager;
+import com.threerings.getdown.util.LaunchUtil;
+
import groovy.lang.Binding;
import groovy.util.GroovyScriptEngine;
*/
public class Jalview
{
- /**
- * // find first query parameter (if any) that doesn't start with j2s // and
- * set as space-delimited arguments to Jalview main
- *
- * @j2sNative
- *
- * var hr = decodeURI(document.location.href); var pos =
- * hr.indexOf("?"); if (pos > 0) { q = hr.substring(pos+1); args =
- * q.split("&"); for (i = 0 ; i < args.length; i++) { arg1 =
- * args[i]; if (!arg1.startsWith("j2s")) { thisApplet.__Info.args =
- * arg1.split(" "); break; } } }
- */
+ static
+ {
+ Platform.getURLCommandArguments();
+ }
+
+ // singleton instance of this class
- /*
- * singleton instance of this class
- */
private static Jalview instance;
private Desktop desktop;
/**
* Java only
*
- * @j2sNative
+ * @j2sIgnore
*/
{
// grab all the rights we can for the JVM
@SuppressWarnings("unused")
private static void setLogging()
{
+
+ /**
+ * @j2sIgnore
+ *
+ */
+ {
+ System.out.println("not in js");
+ }
+
// BH - for event debugging in JavaScript (Java mode only)
- if (!Platform.isJS())// !(/** @j2sNative true ||*/false))
+ if (!Platform.isJS())
/**
* Java only
*
- * @j2sNative
+ * @j2sIgnore
*/
{
Logger.getLogger("").setLevel(Level.ALL);
+ System.getProperty("os.name") + " "
+ System.getProperty("os.version"));
+ String appdirString = System.getProperty("getdownappdir");
+ if (appdirString != null && appdirString.length() > 0)
+ {
+ final File appdir = new File(appdirString);
+ new Thread()
+ {
+ @Override
+ public void run()
+ {
+ LaunchUtil.upgradeGetdown(
+ new File(appdir, "getdown-launcher-old.jar"),
+ new File(appdir, "getdown-launcher.jar"),
+ new File(appdir, "getdown-launcher-new.jar"));
+ }
+ }.start();
+
+ }
ArgsParser aparser = new ArgsParser(args);
boolean headless = false;
if (!Platform.isJS())
/**
- * ignore in JavaScript
+ * Java only
*
- * @j2sNative
+ * @j2sIgnore
*/
{
if (aparser.contains("help") || aparser.contains("h"))
// }
;
desktop.setInBatchMode(true); // indicate we are starting up
+
+ try
+ {
+ JalviewTaskbar.setTaskbar(this);
+ } catch (Exception e)
+ {
+ System.out.println("Cannot set Taskbar");
+ // e.printStackTrace();
+ } catch (Throwable t)
+ {
+ System.out.println("Cannot set Taskbar");
+ // t.printStackTrace();
+ }
+
desktop.setVisible(true);
if (!Platform.isJS())
/**
* Java only
*
- * @j2sNative
+ * @j2sIgnore
*/
{
desktop.startServiceDiscovery();
/**
* ignore in JavaScript -- can't just file existence - could load it?
*
- * @j2sNative
+ * @j2sIgnore
*/
{
if (!file.startsWith("http://") && !file.startsWith("https://"))
// And the user
// ////////////////////
- if (!Platform.isJS() && // /** @j2sNative false && */ // BH 2018
- !headless && file == null && vamsasImport == null
+ if (!Platform.isJS() && !headless && file == null
+ && vamsasImport == null
&& jalview.bin.Cache.getDefault("SHOW_STARTUP_FILE", true))
/**
* Java only
*
- * @j2sNative
+ * @j2sIgnore
*/
{
file = jalview.bin.Cache.getDefault("STARTUP_FILE",
}
try
{
- Map<String, Object> vbinding = new HashMap<>();
+ Map<String, java.lang.Object> vbinding = new HashMap<>();
vbinding.put("Jalview", this);
if (af != null)
{