allow sequence source to be specified as sequence:http://mydasserver/das/source

[jalview.git] / src / jalview / bin / Jalview.java

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 36f4ff6..bb1b7f2 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -532,13 +532,15 @@ public class Jalview
     {
       String nickname = null;
       String url = null;
+      boolean seq=false,feat=true;
       int pos = data.indexOf('=');
+      // determine capabilities
       if (pos > 0)
       {
         nickname = data.substring(0, pos);
       }
       url = data.substring(pos + 1);
-      if (url != null && url.startsWith("http:"))
+      if (url != null && (url.startsWith("http:") || url.startsWith("sequence:http:")))
       {
         if (nickname == null)
         {