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[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index cd0b835..373e916 100755 (executable)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -329,7 +329,13 @@ public class JalviewLite extends Applet
                 if( !inArchive(param) )\r
                   param = addProtocol( param );\r
 \r
-                currentAlignFrame.parseFeaturesFile(param);\r
+                currentAlignFrame.parseFeaturesFile(param, protocol);\r
+              }\r
+\r
+              param = getParameter("showFeatureSettings");\r
+              if(param !=null && param.equalsIgnoreCase("true"))\r
+              {\r
+                currentAlignFrame.featureSettings_actionPerformed();\r
               }\r
 \r
              param = getParameter("annotations");\r
@@ -338,7 +344,7 @@ public class JalviewLite extends Applet
                if( !inArchive(param) )\r
                   param = addProtocol( param );\r
 \r
-               new AnnotationReader().readAnnotationFile(\r
+               new AnnotationFile().readAnnotationFile(\r
                    currentAlignFrame.viewport.getAlignment(),\r
                    param);\r
 \r