\r
import java.awt.*;\r
import java.awt.event.*;\r
-import jalview.appletgui.TreePanel;\r
\r
\r
/**\r
currentAlignFrame.parseFeaturesFile(param);\r
}\r
\r
+ param = getParameter("showFeatureSettings");\r
+ if(param !=null && param.equalsIgnoreCase("true"))\r
+ {\r
+ currentAlignFrame.featureSettings_actionPerformed();\r
+ }\r
+\r
param = getParameter("annotations");\r
if (param != null)\r
{\r
\r
}\r
\r
+ param = getParameter("jnetfile");\r
+ if (param != null)\r
+ {\r
+ try\r
+ {\r
+ if (inArchive(param))\r
+ protocol = AppletFormatAdapter.CLASSLOADER;\r
+ else\r
+ {\r
+ protocol = AppletFormatAdapter.URL;\r
+ param = addProtocol(param);\r
+ }\r
+\r
+ jalview.io.JPredFile predictions = new jalview.io.JPredFile(\r
+ param, protocol);\r
+ new JnetAnnotationMaker().add_annotation(predictions,\r
+ currentAlignFrame.viewport.getAlignment(),\r
+ 0,false); // do not add sequence profile from concise output\r
+ currentAlignFrame.alignPanel.fontChanged();\r
+ currentAlignFrame.alignPanel.setScrollValues(0, 0);\r
+ } catch (Exception ex) {\r
+ ex.printStackTrace();\r
+ }\r
+ }\r
+\r
\r
String pdbfile = applet.getParameter("PDBFILE");\r
if(pdbfile!=null)\r